Get BLAST options for a QuickBLAST instance as a string.

Get the BLAST options for a QuickBLAST instance.

GetQuickBLASTOptions(ptr)

Arguments

ptr

(Rcpp::XPtr<QuickBLAST>) or (unsigned int) Pointer/ID of QuickBLAST instance

Value

(string) BLAST options as std::string

See also

GetAvailableBLASTOptions(), GetQuickBLASTEnums(), SetQuickBLASTOptions()

Examples

blastp_inst <- QuickBLAST::CreateQuickBLASTInstance(
  seq_type = 1,
  strand = 0,
  program = "tblastn",
  save_sequences = FALSE,
  save_hsp_sequences = FALSE
)
#> Using tblastn Defaults...
QuickBLAST::GetQuickBLASTOptions(
  blastp_inst
)
#> [1] ""