Set BLAST options for a QuickBLAST instance. — SetQuickBLASTOptions • QuickBLAST

Set/Modify the BLAST options for a QuickBLAST instance.

SetQuickBLASTOptions(ptr, program_name, options, verbose = TRUE)

Arguments

ptr: (Rcpp::XPtr<QuickBLAST>) or (unsigned int) Pointer/ID of QuickBLAST instance
program_name: (string) Name of the BLAST program
options: (string (or) Named List) List of BLAST options - check QuickBLAST::GetAvailableBLASTOptions(). String should be of the format "-option1 value1 -option2 value2"
verbose: (bool) Verbose?

Value

(bool) TRUE - if options set for the QuickBLAST instance, FALSE otherwise

See also

GetAvailableBLASTOptions(), GetQuickBLASTEnums()

Examples

blastp_inst <- QuickBLAST::CreateQuickBLASTInstance(
  seq_type = 1,
  strand = 0,
  program = "tblastn",
  save_sequences = FALSE,
  save_hsp_sequences = FALSE
)
#> Using tblastn Defaults...
QuickBLAST::SetQuickBLASTOptions(
  blastp_inst,
  "blastp",
  "-evalue 1"
)
#> Option: evalue set to : 1
#> [1] TRUE